rafa

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• Joined on 2026-02-11

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precompute_data_org

Python 0 0

Precompute data done in Big for share4rare

Updated 2026-02-11 13:24:13 +01:00

PhenoOld_Kidney_Inputter

Java 0 0

This is the functioning web for inputting the rare kidney diseases patients. The anonymized can be fetched from: https://drive.google.com/file/d/1WgwaJPeY4ljpVjuA3IPIdPQ0g9YPle14/view?usp=drive_link

Updated 2026-02-11 13:22:25 +01:00

PhenoOld_Kidney

Jupyter Notebook 0 0

Old version of the web for inputting rare kidney disease patients data. Contains helpers for transformers and implementing it in the web. Also contains code in PhenoOld_Kidney/kidney/src/main/java/com/phenoold/hpo_files/standalones/Compare_Data_quality.Rmd or in Compare_Doctors.Rmd used in the comparison of MONDO and CURATED databases. It can generate simulated patients using file PhenoOld_Kidney/kidney/src/main/java/com/phenoold/hpo_files /standalones/Simulate_patients.java or with HPO_embeddings to create custom embeddings to represent symptoms

Updated 2026-02-11 13:19:57 +01:00

HPO_Code

Java 0 0

Old code. Uses semantic similarity measures to calculate scores from Phenomizer, Phrank, etc. It is required for simulating patients in protect PhenoOld_Kidney. The file in HPO_Code is app/src/main/java/HPO_Code/Marato_helpers/main_create_req_files.py

Updated 2026-02-11 13:18:31 +01:00

Alport_Project

Python 0 0

Alport project code

Updated 2026-02-11 13:00:55 +01:00